1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCACCGTCACTCCAACGCCCTTGTTGATGTTTTGCCTCCGGAGGCTGATTCTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttccttttttccaaatctcgactctgttttctgaattaaagttagggtttttgaaacgatctttggtttcttatgtggtgctttatctttttgtgtag
species | Arabidopsis thaliana |
transcript | AT5G58290.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAAT GATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAAEST: gi|116423148|gb|EG465740.1|EG465740
genomic: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAA
EST: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAAT GATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAAEST: gi|301502349|gb|HO207889.1|HO207889
genomic: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAA
EST: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAAT GATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAAEST: gi|164228510|gb|ES196307.1|ES196307
genomic: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAA
EST: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAAT GATATTGGAGGEST: gi|124734144|gb|EH825546.1|EH825546
genomic: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGG
EST: TCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAGT GATATTGGAGGATGCGATEST: gi|125273725|gb|EL287810.1|EL287810
genomic: TCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGGATGCGAT
EST: CCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAAT GATACTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAAEST: gi|124854490|gb|EH938927.1|EH938927
genomic: CCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAA
EST: CTAGCATCTCCCTTCTCAGCCAATCTGAGAGGCCTGACGTCTCCTACAAT GATATTGGAGGATGCGATATTEST: gi|164178230|gb|ES058178.1|ES058178
genomic: CTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGGATGCGATATT
EST: GAAGCCTGACGTCTCCTACAAT GATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAA
genomic: GAAGCCTGACGTCTCCTACAATgtaatgtttc ... ttttgtgtagGATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTGAGGCTGTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACCGTCACTCCAACGCCCTTGTTGATGTTTTGCCTCCGGAGGCTGATTCTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttccttttttccaaatctcgactctgttttctgaattaaagttagggtttttgaaacgatctttggtttcttatgtggtgctttatctttttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC