1 5' 3' | 2 5' 3' | 3 5' 3' |
AAATCTCAAAAACTCACACGGATCCAAAATTCAGATTCACCGGATTCGCACGAAGAACATCATCGTCCTCCTCCAAAGAGGAGCTTTCATTTCCAAATCTgtgagatctcagacactttctcctctcccgtattgttcgatcgcgttgaggttattgtaccctaaatcacgtgtaatacttatcgtcgcag
species | Arabidopsis thaliana |
transcript | AT5G55290.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTTCCAAATCT ATAATTCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAGCAACCCTEST: gi|116410595|gb|EG453187.1|EG453187
genomic: ATTTCCAAATCTgtgagatctc ... atcgtcgcagATAATTCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCT
EST: CGAAGAACATCATCGTCCTCCTCCAAAGAGGAGCTTTCATTTCCAAATCT ATAATTCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTEST: gi|86075966|gb|DR371723.1|DR371723
genomic: CGAAGAACATCATCGTCCTCCTCCAAAGAGGAGCTTTCATTTCCAAATCTgtgagatctc ... atcgtcgcagATAATTCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCT
EST: CGAAGAACATCATCGTCCTCCTCCAAAGAGGAGCTTTCATTTCCAAATCT ATAATTCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCT
genomic: CGAAGAACATCATCGTCCTCCTCCAAAGAGGAGCTTTCATTTCCAAATCTgtgagatctc ... atcgtcgcagATAATTCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCTCAAAAACTCACACGGATCCAAAATTCAGATTCACCGGATTCGCACGAAGAACATCATCGTCCTCCTCCAAAGAGGAGCTTTCATTTCCAAATCTgtgagatctcagacactttctcctctcccgtattgttcgatcgcgttgaggttattgtaccctaaatcacgtgtaatacttatcgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT