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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTACTTTAATCTTCTTTCCCGCTCTCTATTCTTCTTCTTCTTTAGGATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGgtaggtctctcattacctctccctctttctcagtctctctcttgttcgcatttgagcttttgattcttccgatgtttgatgaagcttgattgttggggtt...

Basic information

species Arabidopsis thaliana
transcript AT5G53120.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043708|gb|DR339463.1|DR339463
EST:     ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAG                   
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: gi|86043711|gb|DR339466.1|DR339466
EST:     ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAG                   
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: gi|86043709|gb|DR339464.1|DR339464
EST:     ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAG                   
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: gi|86043705|gb|DR339460.1|DR339460
EST:     ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAG                   
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: gi|86043706|gb|DR339461.1|DR339461
EST:     ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAG                   
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: gi|86043707|gb|DR339462.1|DR339462
EST:     ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAG                   
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt