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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCATAAGAGCCAGACCATCACCGATAACATGGTCGGAATCTTAGGTTCTTTCGATCATCGTCTCTCGGCTCTTGAAACCGCAATGCGTCCCACACAGgtcctttcttcatgatctctctgttttttggatttttagagtctcaaggttgtggaatttgagatctatcttctgttgaaattgaaatgtgattctggatttggtgataaaatggttggcttcttcgacgtttaattttgggggtgtgattgtgtttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT5G52340.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52340.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv08s0007g02340.t01 (Vitis vinifera), 5'ss of exon 1
TTTGCATAAGAGCCAGACCATCACCGATAACATGGTCGGAATCTTAGGTTCTTTCGATCATCGTCTCTCGGCTCTTGAAACCGCAATGCGTCCCACACAGgtcctttcttcatgatctctctgttttttggatttttagagtctcaaggttgtggaatttgagatctatcttctgttgaaattgaaatgtgattctggatttggtgataaaatggttggcttcttcgacgtttaattttgggggtgtgattgtgtttgtgtag
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TCTGCAAAAGAGCCAGACCATCACGGATAGTATGGTCGCCATTCTCGGCTCCTTCGACCACCGCCTCTCCGCTCTCGAAACCGCCATGCGTCCCACTCAGgtg-tttcttcattttctcctcgttt----ggtttccgtga----aaaattcaggaa----aggacaag--------aaaatggaaagaagattgcgggctttatga-------gttctgttttttga-----------------------------------