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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGATCAACGTTCACCGGATCATTCGCTCCACCGCCGTGGTTGGCCGGAGCTCTATCATTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCCGgtactttaactttctctccaccgtaataatagtgatctgtgtattcgtgaacacgcctgaaaaaaaaattgtgggattgatattttttctag

Basic information

species Arabidopsis thaliana
transcript AT5G51040.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164030629|gb|ES149138.1|ES149138
EST:     CCTGCCGCCGCTAACCGGTCATATCCTATTATATTCCG                         GAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAGAACNCTGCGTCTGC
genomic: CCTGCCGCCGCTAACCGGTCATATCCTATTATATTCCGgtactttaac ... ttttttctagGAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAGAACACTGCGTCTGC
EST: gi|124862263|gb|EH946700.1|EH946700
EST:     TTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCCG                         GAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAAGAACACTGCGTCTG
genomic: TTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCCGgtactttaac ... ttttttctagGAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGA-GAACACTGCGTCTG