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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAAATCCGATAACCTCACCCGACTCACCGGAACCATTCCTGGTCCAATCGGTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAGgttctaaccaaattcttctacttttttactttggggattatggtgttgattgaagttaggggctttacttgtttttgctttgattggttagggcgttttg...

Basic information

species Arabidopsis thaliana
transcript AT5G50870.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163980143|gb|ES149054.1|ES149054
EST:     GGCGGTACATTTCAGATCGATATCACTATGCCAG                         ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTT-CAACTAAAGTTTG
genomic: GGCGGTACATTTCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
EST: gi|86075428|gb|DR371185.1|DR371185
EST:     TCAGATCGATATCACTATGCCAG                         ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
genomic: TCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
EST: gi|124918160|gb|EH992025.1|EH992025
EST:     CGGTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAG                         ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGC
genomic: CGGTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGC
EST: gi|124890657|gb|EH969559.1|EH969559
EST:     CGGTACTCCTTACGGAGGCGGTACATTTCAGATCGATATCACTATGCCAG                         ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTT
genomic: CGGTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTT