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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCATCGGAGATGGGCGGAGACGGAAAAGTTTTCACCTTGTCCGAGGTTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatctccgatcccagtttctcattcgattttccgttttcccttagattttgcatcttatcttcgtgagatccgaaattcttgagttgtgttgac...

Basic information

species Arabidopsis thaliana
transcript AT5G48810.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078422|gb|DR374179.1|DR374179
EST:     TTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
genomic: TTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
EST: gi|124791732|gb|EH881411.1|EH881411
EST:     CACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGAATGATCATCCTGGTGGTGATG
genomic: CACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGA-TGATCATCCTGGTGGTGATG
EST: gi|124788973|gb|EH878652.1|EH878652
EST:     TCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
genomic: TCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
EST: gi|124975872|gb|EL049332.1|EL049332
EST:     ATCGACGGCAAG                         GTTTATGATGTGACAAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGT
genomic: ATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGAC-AAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGT
EST: gi|125185114|gb|EL200068.1|EL200068
EST:     CGCCAAGGATTGTTGGATCGTCATCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
genomic: CGCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
EST: gi|125224989|gb|EL239074.1|EL239074
EST:     TTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTG
genomic: TTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTG
EST: gi|163973388|gb|ES025168.1|ES025168
EST:     TCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
genomic: TCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
EST: gi|86081290|gb|DR377047.1|DR377047
EST:     TTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
genomic: TTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
EST: gi|164059462|gb|ES028699.1|ES028699
EST:     GCCAAGGATTGTTGGATCGTCATCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCC
genomic: GCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCC
EST: gi|164068641|gb|ES005190.1|ES005190
EST:     TCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
genomic: TCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
EST: gi|164200748|gb|ES085661.1|ES085661
EST:     TGTTGGATCGTCATCGACGGCAAG                         GTTTATGGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGT
genomic: TGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTAT-GATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGT
EST: gi|163998574|gb|ES050670.1|ES050670
EST:     TGTTGGATCGTCATCGACGGCAAG                         GTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT
genomic: TGTTGGATCGTCATCGACGGCAAGgtcctacatc ... ttatatatagGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGGTGATGAGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGATCATCGGAGATGGGCGGAGACGGAAAAGTTTTCACCTTGTCCGAGGTTTCTCAGCACAGTAGCGCCAAGGATTGTTGGATCGTCATCGACGGCAAGgtcctacatctccgatcccagtttctcattcgattttccgttttcccttagattttgcatcttatcttcgtgagatccgaaattcttgagttgtgttgac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcattc