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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatatcaatctctcttatctctccaattagatgaggtttcgagaaattgatggttcttgctctgtatggattaagtttgtgtttgatacttatgagtgaatcatttgtggttgatttcaattcaatgcttttgaaatgatgatttagatagcagagtgattcatagttgttatgtgttttgatttgtgaag

Basic information

species Arabidopsis thaliana
transcript AT5G48760.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48760.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatatcaatctctcttatctctccaattagatgaggtttcgagaaattgatggttcttgctct-gtatggattaagtttgtgtttgatacttatgagtgaatcatttgtggttgatttcaattcaatgcttttgaaatgatgatttagatagcagagtgattcatagttgttatgtgttttgatttgtgaag
| ||| ||||||| ||||||||||| |||||||| ||||| || ||||| || || ||||||||||| || ||||| ||||||||||| || ||||| ||||  ||  || | || || || | | |   | |  |     |||  |    |  |   |||   | |  |  ||  |||| ||   ||  | |  || ||                                                                                                 
AATACTTGAGGTTCCTTCGCAAACGCATGAACACCAAACCCTCCCATGGCCCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagt-cattactcactttttttttttttactttaattccttttaaagtttataactttccaacacaagcgtgttttaatttgtcgtggggtgtttttgt------------------------------------------------------------------------------------------------

upper sequence: AT5G48760.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G13580.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatatcaatctct---cttatctctccaattagatgaggtttcgagaaattgatggttcttgctctgtatggattaagtttgtgtttgatacttatgagtgaatcatttgtggttgatttcaattcaatgcttttgaaatgatgatttagatagcagagtgattcatagttgttatgtgttttgatttgtgaag
||||| ||||||| || |||||||| |||||||| || ||||| || || || || |||||||| || || ||||| ||||||||||| || ||||| ||||  || | ||  |   |     | | | |||  |   |  |   ||  | | |   ||| || ||| | | | | | |   |||   ||| |  | |||                                                                                                   
AGTACTTGAGGTTCCTCCGCAAACGCATGAACACCAAGCCTTCCCACGGCCCCATCCACTTCCGCGCACCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtttttcttttctttgttctttttttcctttctcacaatacttatatataacaatg-ttgttgttttttttcgttgttgttctcgttcgtaatttag--------------------------------------------------------------------------------------------------

upper sequence: AT5G48760.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatatcaatctctcttatctctccaattagatgaggtttcgagaaattgat---ggttcttgctctgtatggattaagtttgtgtttgatacttatgagtgaatcatttgtggttgatttcaattcaatgcttttgaaatgatgatttagatagcagagtgattcatagttgttatgtgttttgatttgtgaag
| ||| |||| || || |||||||| |||||||| ||||| || ||||| ||||| |||||||| || ||  |||| ||||||||||| || ||||| ||||  || | ||| | | | ||||   |   |||  ||    | |  | ||  |  |     |||||     ||  |||     ||||||||| | |  | |   ||  |  ||||| |                                                                                 
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattatt---atttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactt-tttgtgtttta-atctgttgttgggtt-tttgtag---------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86017893|gb|DR313639.1|DR313639
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCACTAGCACGTTTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|116454687|gb|EG497279.1|EG497279
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGC
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGC
EST: gi|124725976|gb|EH817378.1|EH817378
EST:     CTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTAACTGTTCGCGG                         TATGATTCCACACAAG
genomic: CTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTA-CTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAG
EST: gi|125199825|gb|EL214779.1|EL214779
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGAC
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGAC
EST: gi|86017891|gb|DR313637.1|DR313637
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCACTAGCACGTTTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|86017890|gb|DR313636.1|DR313636
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCACTAGCACGTTTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|86023702|gb|DR319455.1|DR319455
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|86017896|gb|DR313642.1|DR313642
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCACTAGCACGTTTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|125073034|gb|EL137515.1|EL137515
EST:     CTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
genomic: CTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|125291982|gb|EL306067.1|EL306067
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAGGCGTGGAGCTGCTGCATTAG
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAG
EST: gi|86017900|gb|DR313646.1|DR313646
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCACTAGCACGTTTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|86017895|gb|DR313641.1|DR313641
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCACTAGCACGTTTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|47831264|gb|CK120948.1|CK120948
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|86023706|gb|DR319459.1|DR319459
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGSGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|86017889|gb|DR313635.1|DR313635
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAG
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAG
EST: gi|47827976|gb|CK117660.1|CK117660
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|164158875|gb|ES002790.1|ES002790
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACAC
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACAC
EST: gi|164083742|gb|ES132359.1|ES132359
EST:     CTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
genomic: CTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|124732234|gb|EH823636.1|EH823636
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTA
EST: gi|86023705|gb|DR319458.1|DR319458
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|86017892|gb|DR313638.1|DR313638
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCACTAGCACGTTTGAA
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAA
EST: gi|164146989|gb|ES104377.1|ES104377
EST:     CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGG                         TATGATTCCACACAAGACGAAGCGTGGAGCTGCTGC
genomic: CCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatat ... atttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGC