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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAGCTTCTCCTCCTTACCAAAGACTCGACGGTCTACCGGAAAAAATGGCTGCCAATTTCTGGAATTCATCTCACTAgtaaatgttctttaaaactttacccatcaaaattcacttcttcttctccttctaagcaacttctaatttcaatttctcgaatttttttgttttgtttttgcgtttgtacgaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G48640.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054344|gb|DR350101.1|DR350101
EST:     GACGGTCTACCGGAAAAAATGGCTGCCAATTTCTGGAATTCATCTCACTA                         TAAACAGCTTTTGGATCCAGAAGAAGTCGACGTA-KTCATGATCTCGATAA
genomic: GACGGTCTACCGGAAAAAATGGCTGCCAATTTCTGGAATTCATCTCACTAgtaaatgttc ... tacgaaacagTAAACAGCTTTTGGATCCAGAAGAAGTCGACGTAGTTCATGATCTCGATAA
EST: gi|124765949|gb|EH856079.1|EH856079
EST:     GACGGTCTACCGGAAAAAATGGCTGCCAATTTCTGGAATTCATCTCACTA                         TAAACAGCTTTTGGATCCAGAAGAAGTCGACGTAGTTCATGATCT
genomic: GACGGTCTACCGGAAAAAATGGCTGCCAATTTCTGGAATTCATCTCACTAgtaaatgttc ... tacgaaacagTAAACAGCTTTTGGATCCAGAAGAAGTCGACGTAGTTCATGATCT