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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCAAGACAACGATCGATTCATTGATATGATGGAAAATTATTTCGAAAAACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaattaaccatcatcactctctcgattgtgattcaattttaatcgaatttcgtgttttgttttctcatttctagattaagccaaattagggca...

Basic information

species Arabidopsis thaliana
transcript AT5G48020.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124801629|gb|EH890864.1|EH890864
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTG
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTG
EST: gi|86046030|gb|DR341785.1|DR341785
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
EST: gi|86046031|gb|DR341786.1|DR341786
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
EST: gi|116432353|gb|EG474945.1|EG474945
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
EST: gi|116432357|gb|EG474949.1|EG474949
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
EST: gi|116433075|gb|EG475667.1|EG475667
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
EST: gi|125043166|gb|EL115435.1|EL115435
EST:     TTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGAT
genomic: TTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGAT
EST: gi|116432354|gb|EG474946.1|EG474946
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
EST: gi|19874808|gb|AU235639.1|AU235639
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
EST: gi|116433069|gb|EG475661.1|EG475661
EST:     AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAG                         GTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA
genomic: AACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaa ... tttttaacagGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTCAAGACAACGATCGATTCATTGATATGATGGAAAATTATTTCGAAAAACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGgtttcttcaattaaccatcatcactctctcgattgtgattcaattttaatcgaatttcgtgttttgttttctcatttctagattaagccaaattagggca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagccaaa