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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTCTCCGTCTCTTCGCTTCTAGGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatctctccttgttcttgattttcctctctctttcactttcctctgtaatctctgagttttttttttatggatctgttgattag

Basic information

species Arabidopsis thaliana
transcript AT5G47930.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|222358183|gb|GH717943.1|GH717943
EST:     GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATG                         GTGCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAG
genomic: GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatc ... tgttgattagGTGCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAG
EST: gi|47831821|gb|CK121505.1|CK121505
EST:     CATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATG                         GTGCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAG
genomic: CATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatc ... tgttgattagGTGCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAG
EST: gi|124851226|gb|EH935663.1|EH935663
EST:     GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATG                         GTGCTCCAAAACGACATCGAT
genomic: GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatc ... tgttgattagGTGCTCCAAAACGACATCGAT
EST: gi|125104106|gb|EL158281.1|EL158281
EST:     TCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATG                         GTGCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAG
genomic: TCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatc ... tgttgattagGTGCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAG
EST: gi|125291614|gb|EL305699.1|EL305699
EST:     GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATG                         GTGACTCCAAAACGACATCGATCTCCTTCA
genomic: GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatc ... tgttgattagGTG-CTCCAAAACGACATCGATCTCCTTCA
EST: gi|124984334|gb|EL056997.1|EL056997
EST:     GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATG                         GTGCTACCAAAA
genomic: GGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatc ... tgttgattagGTGCT-CCAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGTCTCCGTCTCTTCGCTTCTAGGGTTTCATCAACCAAATTCGCTTTCGCCGCCTTTCCACAAGCAATCATGgtgaaatatctctccttgttcttgattttcctctctctttcactttcctctgtaatctctgagttttttttttatggatctgttgattag

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