1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCTGGAATATTCCAGATCAATACCGGAGTCTCCACGTTTCAGCGACTCGTTAACACACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTgtatgttgaaattgaaatctaaatttcatttgataaaaaaaattgaatttttgatttcaattttgattgcttttttttttttgtggattctgaatttagaaattattattcggattttgttgtgatag
species | Arabidopsis thaliana |
transcript | AT5G46860.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTACTCCC-AAGATACACCGGAGCTCCGGGAGAAGCT GCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAGCTAAEST: gi|125155828|gb|EL185742.1|EL185742
genomic: GGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTgtatgttgaa ... gttgtgatagGCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAGCTAA
EST: CTCCCAAAGATACACCGGAGCTCCGGGAGAAGCT GCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAGEST: gi|86038438|gb|DR334193.1|DR334193
genomic: CTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTgtatgttgaa ... gttgtgatagGCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAG
EST: GTTAACACACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCT GCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAGCTAA
genomic: GTTAACACACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTgtatgttgaa ... gttgtgatagGCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAGCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGGAATATTCCAGATCAATACCGGAGTCTCCACGTTTCAGCGACTCGTTAACACACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTgtatgttgaaattgaaatctaaatttcatttgataaaaaaaattgaatttttgatttcaattttgattgcttttttttttttgtggattctgaatttagaaattattattcggattttgttgtgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC