1 5' 3' |
GATTCGTACTTGTTTGAGTACAACTACCATTTGCCCTGAACTAAATCAGAGATACACTTTGGCTCAAGATTTCTTCAATGCTCATCTTGATCCCATTCAAgtaagtatcctcttcccattttattcaaatacattttcaatttttctctgttgttttgttgcttgtaattgttaattagtttttgcattaagtttgttaa...
species | Arabidopsis thaliana |
transcript | AT5G46700.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAATGCTCATCTTGATCCCATTCAA TCTGGTTGCTGCAAGCCCCCAACAAAATGTGGATTCACATTTGTTAATCCTEST: gi|164171570|gb|ES185242.1|ES185242
genomic: TCAATGCTCATCTTGATCCCATTCAAgtaagtatcc ... ttactttcagTCTGGTTGCTGCAAGCCCCCAACAAAATGTGGATTCACATTTGTTAATCCT
EST: GATACACTTTGGCTCAAGATTTCTTCAATGCTCATCTTGATCCCATTCAA TCTGGTTGCTGCAAGCCCCCAACAAAATGTEST: gi|164033917|gb|EL971990.1|EL971990
genomic: GATACACTTTGGCTCAAGATTTCTTCAATGCTCATCTTGATCCCATTCAAgtaagtatcc ... ttactttcagTCTGGTTGCTGCAAGCCCCCAACAAAATGT
EST: TACACTTTGGCTCAAGATTTCTTCAATGCTCATCTTGATCCCATTCAA TCTGGCTGCTGCAAGCCCCCAACAAAATGTGGATTCACATTTGTT
genomic: TACACTTTGGCTCAAGATTTCTTCAATGCTCATCTTGATCCCATTCAAgtaagtatcc ... ttactttcagTCTGGTTGCTGCAAGCCCCCAACAAAATGTGGATTCACATTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCGTACTTGTTTGAGTACAACTACCATTTGCCCTGAACTAAATCAGAGATACACTTTGGCTCAAGATTTCTTCAATGCTCATCTTGATCCCATTCAAgtaagtatcctcttcccattttattcaaatacattttcaatttttctctgttgttttgttgcttgtaattgttaattagtttttgcattaagtttgttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttctc