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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGAATGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGgtacttttgcttctcctccgtaatactaattggtttcaatatctatctaggtttagtagtggtccttgtggattttagggttcatagatctcgacaaata...

Basic information

species Arabidopsis thaliana
transcript AT5G45620.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45620.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G34310.1 (Glycine max), 5'ss of exon 1
CGGCGAATGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGgtacttttgcttctcctccgtaatactaattggtttcaatatctatctaggtttagtagtggtccttgtggattttagggttcatagatctcgacaaata----
|  ||| ||||||||||| || || |||||||| ||||| ||||||||||| || ||||| || |||||||| |||||  | |||||||| ||||| ||||| |   | |||||  ||| ||  |||      | |   | |   ||||    || || |  |   |  |  |||  |  ||  |   | || || | |     
CTCCGATTGGTACAATTCGCTGGCGGATCTGTACCAGAAGAAGCTCTGGCACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagct-cttctt-tccttaccactcgcaattattgttgttgttctataactattattactggcttcgtgttt--gctttgttttgtttcaacgattgttag

upper sequence: AT5G45620.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA01G01460.1 (Glycine max), 5'ss of exon 1
CGGCGAATGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGgta---cttttgcttctcctccgtaatactaattggtttcaatatctatc-taggtttagtagtggtccttgtggattttagggttcatagat-ctcgacaaata
|  ||| ||||||||||| || || ||||| || ||||| ||||||||||| || || ||||| ||||| || |||||| | |||||||| ||||| ||||||   ||| ||  | | ||| ||| |||   |   || || |  | ||  |  |||  | |    |  ||||||   || |   | ||     ||||| | |  
CTCCGATTGGTACAATTCGCTGGCGGATCTATACCAGAACAAGCTCTGGCACCAGCTTACCCTCAAGCTTGAGCAGTTCGTGGCTCTCGCCGTCTTCCAGgtaactcttctgtctttactc-gtattaccgctct-ttccactcccaattgtttgttctgaaact-tttttgtgggggttggtagtgatgtgcactcgagaga--

upper sequence: AT5G45620.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv02s0012g02660.t01 (Vitis vinifera), 5'ss of exon 1
CGGC-GAATGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGgtacttttgcttctcctccgtaatactaattggtttcaatatctatctaggtttagta-gtggtcct-tgtggattttagggttcatagatctcgacaaata-
 ||| ||||||||||| || |||||||||||||| ||||  ||||||||||| |||||||| || || |||||||||||| ||||||| || ||||||||||    ||  |   || | |   ||  |   |   || ||| ||| | |    | |||| |||||    | |||||||     ||  ||  |      |  || 
-GGCAGAATGGTACAACTCTCTTGCAGATCTGTACCAGAGGAAGCTCTGGCACCAACTCACTCTCAAACTCGAACAGTTCGTCGCTCTTGCAGTCTTTCAGgcctgttcccccatctttctccatttt--ctatctttaat-tcttttttttctcagtatgtggtgtggtttggatttcgaattttttattttattttatttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152034147|gb|BP868636.2|BP868636
EST:     ATCAACTCACCCTTAAGCTCGAAAAGTTCATCGCTCTCGCTGTCTTTCAG                         GCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAG
genomic: ATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGgtacttttgc ... ttcatttcagGCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAG
EST: gi|116482621|gb|EG525213.1|EG525213
EST:     ATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAG                         GCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAG
genomic: ATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGgtacttttgc ... ttcatttcagGCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAG