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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGAGAGAGAAAGCGGTGGAGTCGTGATAAGGGAGAAGCTCTGGATACAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcgagatcgcctttttttattttgtttctcgtgttttgactgatgcgcttttgattctctcttcgtttgtttgctttgagtatatttttattat...

Basic information

species Arabidopsis thaliana
transcript AT5G45430.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125229837|gb|EL243922.1|EL243922
EST:     CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG                         GTTAGATTAAGCTTCGTATTTAGTGGATTTT
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTT
EST: gi|116444405|gb|EG486997.1|EG486997
EST:     CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG                         GTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
EST: gi|116444417|gb|EG487009.1|EG487009
EST:     CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG                         GTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
EST: gi|124928551|gb|EL006187.1|EL006187
EST:     CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAG                         GTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC
genomic: CAGTCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGgtaaaatcga ... tcattatcagGTTAGATTAAGCTTCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAAC