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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTTTTTTGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGTGAAAGgtccctttttatcttcttctcaaaatctctctgtttctttatccttttgcttgaattgctaaagtctctgaagtctctgtttctgattgttttgatgagt...

Basic information

species Arabidopsis thaliana
transcript AT5G45370.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45370.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G21200.1 (Glycine max), 5'ss of exon 1
AAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTTTTTTGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGTGAAAGgtccctttttatcttct-tctcaaaatctctctgt-ttctttatccttttgcttgaattgctaaagtctctgaagtctctgtttctgattgttttgatgagt
|||| || || ||||| || || || ||  |||| || || ||||||||||||||  |||| ||| |||||||||| ||||||||||   |||| |||| || ||     ||  ||| ||||    ||| ||| | || ||||   ||||  ||   |   |  |    |  | ||   | | | |||    |  | ||   
AAGTTGCACTCAACGTCGGGGTCAACCAAATCGTCTTCTGCGTCTTTCGCGATCTCATTGCCCTCGCCATTCTCGCCCCTCTCGCTTACATCCGCGAAAAgtaccccaccattctctctctctctctctttctctcttgtttaagtttttatttttttatttttatcggcaaatgttaatttgtttgaaatatcagttgc--