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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGGAAGTTTCATCAGTCTAATTTCTAAGTACGAGATCCGTTACGAAGGCATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattcgaaacctatgcgatatcgaaattcctattttagttttccgaacattgcagagattacgtgtttatgcgttgtgtattcgtaaccaaaaca...

Basic information

species Arabidopsis thaliana
transcript AT5G45330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074167|gb|DR369924.1|DR369924
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGTGGAACGGAGGGGAGGAAAGAAAGATGGGCCGCAAATTCCG
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAA-GAAAGATGGGCCGCAAATTCCG
EST: gi|116390063|gb|EG432655.1|EG432655
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
EST: gi|116390010|gb|EG432602.1|EG432602
EST:     ATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTNNNNNNNCG                         TAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCG
genomic: ATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCT-AAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCG
EST: gi|116390101|gb|EG432693.1|EG432693
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
EST: gi|116389980|gb|EG432572.1|EG432572
EST:     ATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTNNNNNNNCG                         TAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCG
genomic: ATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCT-AAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCG
EST: gi|116389975|gb|EG432567.1|EG432567
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
EST: gi|116390058|gb|EG432650.1|EG432650
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGCGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
EST: gi|116390108|gb|EG432700.1|EG432700
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGTGGAACGGAGGGGAGGAAAAAAGATGGGCCGCAAATTCCGC
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
EST: gi|116390106|gb|EG432698.1|EG432698
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
EST: gi|116390034|gb|EG432626.1|EG432626
EST:     CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACG                         TAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC
genomic: CATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattc ... ggttgtgcagTAAGATCATGTGGAACGGAGGGGAGGAAGAAAGATGGGCCGCAAATTCCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGGAAGTTTCATCAGTCTAATTTCTAAGTACGAGATCCGTTACGAAGGCATTCTCTACCATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGgtacggattcgaaacctatgcgatatcgaaattcctattttagttttccgaacattgcagagattacgtgtttatgcgttgtgtattcgtaaccaaaaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaaaac