1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATGCTTGCGATTGCAGAGATTCTCTTCGATTTGCTTATCAGCTAGCAGAGAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAGgtaagtaagttcggattatgaaaaagcttcaaactttctgagttttgaagcaagttgttggtttttgattcagtgatgggtaacttttgtttgtttgcttggctctgttttaatgtcag
species | Arabidopsis thaliana |
transcript | AT5G45170.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAG GGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAGEST: gi|152034621|gb|BP832981.2|BP832981
genomic: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAGgtaagtaagt ... ttaatgtcagGGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAG
EST: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAG GGTTATGATGGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAGEST: gi|124850390|gb|EH934827.1|EH934827
genomic: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAGgtaagtaagt ... ttaatgtcagGGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAG
EST: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAG GGTTATGATTGATACATGGTCAAGTAATCGCCAAGCEST: gi|116478590|gb|EG521182.1|EG521182
genomic: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAGgtaagtaagt ... ttaatgtcagGGTTATGATTGATACATGGTCAAGTAATCGCCAAGC
EST: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAG GGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAG
genomic: GAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAGgtaagtaagt ... ttaatgtcagGGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCTTGCGATTGCAGAGATTCTCTTCGATTTGCTTATCAGCTAGCAGAGAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAGgtaagtaagttcggattatgaaaaagcttcaaactttctgagttttgaagcaagttgttggtttttgattcagtgatgggtaacttttgtttgtttgcttggctctgttttaatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA