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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTCAGATAACGCAGAATTTTTTTATTCTCGCCGGAGTTTTCTCCTCCCACCGTCTCTGATTCTCGTCGCCGCCGTACACAGTTGTTGTTCTCTGCCGgtaactttaccttctccgatctctcgaatcggtcttctttgtgctgttttcgtttcttatacgaggatttgagtatttgttgctaatcatcatctagctc...

Basic information

species Arabidopsis thaliana
transcript AT5G42560.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124867282|gb|EH951719.1|EH951719
EST:     CACCGTCTCTGATTCTCGTCGCCGCCGTACACAGTTGTTGTTCTCTGCCG                         TTTCTGCAAGATGATTGGATCGTTTCTT
genomic: CACCGTCTCTGATTCTCGTCGCCGCCGTACACAGTTGTTGTTCTCTGCCGgtaactttac ... ctgctttcagTTTCTGCAAGATGATTGGATCGTTTCTT
EST: gi|116466771|gb|EG509363.1|EG509363
EST:     CACCGTCTCTGATTCTCGTCGCCGCCGTACACAGTTGTTGTTCTCTGCCG                         TTTCTGCAAGATGATTGGATCGTTTCTTACAAGAGGATTGGTGTACGAAAA
genomic: CACCGTCTCTGATTCTCGTCGCCGCCGTACACAGTTGTTGTTCTCTGCCGgtaactttac ... ctgctttcagTTTCTGCAAGATGATTGGATCGTTTCTTACAAGAGGATTGGTGTACGAAAA