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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCACCACCGTCGCGTCGGGTTCTAGTGATGAAGATCTCAAGACTTGGGATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGgtttgtcaaacttatttttaattgctttggttttcaaagtttgcgatttcatttctagggtttgagatcttgatttctgtttgagatctaattttagggt...

Basic information

species Arabidopsis thaliana
transcript AT5G42190.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429650|gb|EG472242.1|EG472242
EST:     ATTCTGAGTTTATCAAAGTTGATCAGGACACTCTCTTCGATCTTATCCTG                         GCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACA
genomic: ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGgtttgtcaaa ... caccttttagGCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACA
EST: gi|124757051|gb|EH847181.1|EH847181
EST:     ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTG                         GCTGCTAACTACTTGAATATC
genomic: ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGgtttgtcaaa ... caccttttagGCTGCTAACTACTTGAATATC
EST: gi|124708982|gb|EH800384.1|EH800384
EST:     ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTG                         GCTGCTAACTACTTGAATATCAAGGGACTGTTGGACT
genomic: ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGgtttgtcaaa ... caccttttagGCTGCTAACTACTTGAATATCAAGGGACTGTTGGACT
EST: gi|19874870|gb|AU235701.1|AU235701
EST:     ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTG                         GCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACA
genomic: ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGgtttgtcaaa ... caccttttagGCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACA
EST: gi|125016644|gb|EL088913.1|EL088913
EST:     ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTG                         GCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACT
genomic: ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGgtttgtcaaa ... caccttttagGCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACT
EST: gi|125127426|gb|EL172272.1|EL172272
EST:     ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTG                         GCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAG
genomic: ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGgtttgtcaaa ... caccttttagGCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAG