1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTTTGCTTTCTTCCAATCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagctttctccttttgattaacccacacgagaaaaagctctcttcttttgtaggaattcaaaaagctcgtctcttcttgttcgattcaatcagattagaaaaagtttctggatttgagctggattgatctaggtttaacttggattactttttgtag
species | Arabidopsis thaliana |
transcript | AT5G41700.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGAEST: gi|125225640|gb|EL239725.1|EL239725
genomic: ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGA
EST: CATCTGCAGGAGTGAATCGCAAAACCAAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAAEST: gi|125258902|gb|EL272987.1|EL272987
genomic: CATCTGCAGGAGTGAATCGCAAAACC-AAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAA
EST: AGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATEST: gi|124723978|gb|EH815380.1|EH815380
genomic: AGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGAT
EST: TCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGEST: gi|124815662|gb|EH900528.1|EH900528
genomic: TCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTG
EST: GGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATEST: gi|124829504|gb|EH914095.1|EH914095
genomic: GGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGAT
EST: GCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGAEST: gi|86027897|gb|DR323650.1|DR323650
genomic: GCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGA
EST: ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGEST: gi|125184096|gb|EL199050.1|EL199050
genomic: ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAG
EST: TCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGEST: gi|86027888|gb|DR323641.1|DR323641
genomic: TCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGG
EST: CATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGEST: gi|125264534|gb|EL278619.1|EL278619
genomic: CATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAG
EST: CATCTGCAGGAGTGAATCGCAAAACCAAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAAEST: gi|164153133|gb|EL994079.1|EL994079
genomic: CATCTGCAGGAGTGAATCGCAAAACCAAA-TTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAA
EST: GAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCEST: gi|125288799|gb|EL302884.1|EL302884
genomic: GAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGC
EST: CATCTGCAGGAGTGAATCGCAAAACCAAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAAEST: gi|86027910|gb|DR323663.1|DR323663
genomic: CATCTGCAGGAGTGAATCGCAAAACC-AAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAA
EST: CATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGEST: gi|124772553|gb|EH862682.1|EH862682
genomic: CATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAG
EST: AAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGEST: gi|125209339|gb|EL224293.1|EL224293
genomic: AAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAG
EST: CATCTGCAGGAGTGAATCGCAAAACCAAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGEST: gi|124823645|gb|EH908511.1|EH908511
genomic: CATCTGCAGGAGTGAATCGCAAAACC-AAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGG
EST: GCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATEST: gi|86027892|gb|DR323645.1|DR323645
genomic: GCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGAT
EST: CATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGTAGCTGAAGEST: gi|86027906|gb|DR323659.1|DR323659
genomic: CATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAG
EST: ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGEST: gi|86027893|gb|DR323646.1|DR323646
genomic: ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAG
EST: GCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAG GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAG
genomic: TCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagc ... ctttttgtagGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGCTTTCTTCCAATCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGgtatcaaagctttctccttttgattaacccacacgagaaaaagctctcttcttttgtaggaattcaaaaagctcgtctcttcttgttcgattcaatcagattagaaaaagtttctggatttgagctggattgatctaggtttaacttggattactttttgtag
- - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT