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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACTCTTCCGATCTCTCCCTCACGCTCGCAATTCTCTCGTCTCCATTTTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTGgtgagtttataatctatcttttgctctgcttcgatacttcaaagtctgttccttttgtctctctgagttcggtttttagttgtgttttatttcgacttct...

Basic information

species Arabidopsis thaliana
transcript AT5G40850.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444618|gb|EG487210.1|EG487210
EST:     TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTG                         GCNNNNNNNNNNNNTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
genomic: TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTGgtgagtttat ... tcttgtacagGCGTGTGTGTGTGTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
EST: gi|116459483|gb|EG502075.1|EG502075
EST:     TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTG                         GCNNNNNNNNNNNNTGTCGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
genomic: TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTGgtgagtttat ... tcttgtacagGCGTGTGTGTGTGTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
EST: gi|116459485|gb|EG502077.1|EG502077
EST:     TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTG                         GCNNNNNNNNNNNNTGTCGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
genomic: TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTGgtgagtttat ... tcttgtacagGCGTGTGTGTGTGTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
EST: gi|116486713|gb|EG529305.1|EG529305
EST:     TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTG                         GC--GTGTGTGTGTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
genomic: TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTGgtgagtttat ... tcttgtacagGCGTGTGTGTGTGTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
EST: gi|116486712|gb|EG529304.1|EG529304
EST:     TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTG                         GC--GTGTGTGTGTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT
genomic: TTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTGgtgagtttat ... tcttgtacagGCGTGTGTGTGTGTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAACTCTTCCGATCTCTCCCTCACGCTCGCAATTCTCTCGTCTCCATTTTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCCTTGgtgagtttataatctatcttttgctctgcttcgatacttcaaagtctgttccttttgtctctctgagttcggtttttagttgtgttttatttcgacttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctctg