Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCAATGCCCATCTCATTGGATTCTCCTCTGCTTCTTCATCTCTTCTCAGTTTTGGGGATTCTCACTTCCCACTTCGATAATTCAACAAAATCTCGAGgtgaaatttttagggtttttcagcaatttcaactgtaaatttcgtgtagaagaatgtctgtatcactttagggtttgtaatcgatttggcttacttgggatttacttagaattctagattttgttcaaattttgaagctttgtggttgttgttctacag

Basic information

species Arabidopsis thaliana
transcript AT5G40710.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057312|gb|DR353069.1|DR353069
EST:     AGTTTTGGGGATTCTCACTTCCCTCTTCGATAATTCAACAAAATCTCGAG                         GGTTTTAAAGATCCTGAAGACGGTTTTCATGAGATTCATTGTTCAAGAGAA
genomic: AGTTTTGGGGATTCTCACTTCCCACTTCGATAATTCAACAAAATCTCGAGgtgaaatttt ... tgttctacagGGTTTTAAAGATCCTGAAGACGGTTTTCATGAGATTCATTGTTCAAGAGAA
EST: gi|19878927|gb|AU239758.1|AU239758
EST:     AGTTTTGGGGATTCTCACTTCCCACTTCGATAATTCAACAAAATCTCGAG                         GGTTTTAAAGATCCTGAAGACGGTTTTCATAAGATTCATTGTTCAAGAGAA
genomic: AGTTTTGGGGATTCTCACTTCCCACTTCGATAATTCAACAAAATCTCGAGgtgaaatttt ... tgttctacagGGTTTTAAAGATCCTGAAGACGGTTTTCATGAGATTCATTGTTCAAGAGAA