1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGTGTTTGAATTAGATCCTAAATGGGTTGTTGATCCTCAACATCTCTTTGTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAAATCTATGAAGGAAAgtaagtttatttctttatcagattaatttcatcaaaagttttactctgtatatggttctgaatccattattgtttccctttttctcggcgattgatctgt...
species | Arabidopsis thaliana |
transcript | AT5G40540.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAAATCTATGAAGGAAA GTATAAGAACAAAACAGTTGCTATTAAGATTGEST: gi|116424460|gb|EG467052.1|EG467052
genomic: GTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAAATCTATGAAGGAAAgtaagtttat ... tcttgtttagGTATAAGAACAAAACAGTTGCTATTAAGATTG
EST: GTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAAATCTATGAAGGAAA GTATAAGAACAAAACAGTTGCTATTAAGATTGTTAAAAGAGGAGAATCTCC
genomic: GTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAAATCTATGAAGGAAAgtaagtttat ... tcttgtttagGTATAAGAACAAAACAGTTGCTATTAAGATTGTTAAAAGAGGAGAATCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGTTTGAATTAGATCCTAAATGGGTTGTTGATCCTCAACATCTCTTTGTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAAATCTATGAAGGAAAgtaagtttatttctttatcagattaatttcatcaaaagttttactctgtatatggttctgaatccattattgtttccctttttctcggcgattgatctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttctc