1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTTTGAATCTCCAAATCCAGAACTCGAGTGTTAAATCTTCGAAAAGATCAAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGgtaaacaaatttctaactttcattttgttttgctgattaagttggtttattagttgtagtccttttgttcttccattgaagtagtttagagttatagttc...
species | Arabidopsis thaliana |
transcript | AT5G37680.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAG CTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCEST: gi|86024177|gb|DR319930.1|DR319930
genomic: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGgtaaacaaat ... gttgtgtcagCTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGC
EST: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAG CTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCEST: gi|86024174|gb|DR319927.1|DR319927
genomic: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGgtaaacaaat ... gttgtgtcagCTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGC
EST: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAG CTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCEST: gi|86024176|gb|DR319929.1|DR319929
genomic: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGgtaaacaaat ... gttgtgtcagCTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGC
EST: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAG CTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGC
genomic: AAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGgtaaacaaat ... gttgtgtcagCTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTGAATCTCCAAATCCAGAACTCGAGTGTTAAATCTTCGAAAAGATCAAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGgtaaacaaatttctaactttcattttgttttgctgattaagttggtttattagttgtagtccttttgttcttccattgaagtagtttagagttatagttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG