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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTCGTTTATCTATTGCTGGAAATTGCAGGATGTGTCTTGTTGAGGTTGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcgattccaggaaaatttctatgctgatggattgattttgatcgttgattggtggaatatatttggatttggtgctattgctaagagtttttgtaacag

Basic information

species Arabidopsis thaliana
transcript AT5G37510.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37510.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G126038_T01 (Zea mays), 5'ss of exon 1
CATTCTCGTTTATCTATTGCTGGAAATTGCAGGATGTGTCTTGTTGAGGTTGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcgattccaggaaaatttctatgctgatggattgattttgatcgttgattggtggaatat--atttggatttggtgctattgctaagagtttttgtaacag
|||   ||  | || || |||||||| ||| | |||||||| || ||||| ||||| || || ||||| || ||||| ||||||||||| ||||| || ||| || | | | |   | |  || |   |  |  || ||   | |  | |     || |   ||||  |  ||   ||  || |  |     | | || | |     
CATAGCCGACTCTCCATCGCTGGAAACTGCCGCATGTGTCTCGTCGAGGTCGAGAAGTCGCCCAAGCCCGTCGCTTCCTGTGCCATGCCCGCGCTCCCAGgtcagctggctcctctgca--ttccgtcggcggcggttttcatgttcttgcgcgctgttctgatattgaaatgtggttaatgttggtctgctgcgcttcttt-----

upper sequence: AT5G37510.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S170_67V6.1 (Physcomitrella patens), 5'ss of exon 1
CATTCTCGTTTATCTATTGCTGGAAATTGCAGGATGTGTCTTGTTGAGGTTGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgt-tagttcgatt--ccaggaaaatttctatgctgatggattgat-tttgatcgttgattggtggaatatatttggatttggtgctattgctaagagtttttgtaacag------------------------
||   |||| | || || || || |||||| | |||||||| |||||||| |||||  |||| |||||||| || |||||||||||||||||  | || ||| |  ||| |||    || ||   |  | |     | |   | | |||||      ||| |||   |   | |   || ||   | |    ||| |   |  ||| ||                        
CACAGTCGTCTCTCCATAGCAGGGAATTGCCGCATGTGTCTGGTTGAGGTCGAGAAGACTCCCAAGCCTGTGGCCTCATGTGCCATGCCTGCTTTGCCAGgtctgattccattagttagtaaccctcttttctcagttgcaagctgtttgacatacaattcgtgcggttcttataacttggggtgtgtctaaaagcgggatactaagaggtcgaatggctgaattgcgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457684|gb|EG500276.1|EG500276
EST:     TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTG                         GGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
genomic: TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcga ... tttgtaacagGGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
EST: gi|116446464|gb|EG489056.1|EG489056
EST:     TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTG                         GGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
genomic: TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcga ... tttgtaacagGGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
EST: gi|116457686|gb|EG500278.1|EG500278
EST:     TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTG                         GGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
genomic: TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcga ... tttgtaacagGGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
EST: gi|116424612|gb|EG467204.1|EG467204
EST:     TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTG                         GGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
genomic: TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcga ... tttgtaacagGGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
EST: gi|125050274|gb|EL122543.1|EL122543
EST:     AAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTG                         GGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
genomic: AAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcga ... tttgtaacagGGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
EST: gi|116411626|gb|EG454218.1|EG454218
EST:     TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTG                         GGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
genomic: TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcga ... tttgtaacagGGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAG
EST: gi|125197834|gb|EL212788.1|EL212788
EST:     TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTG                         GGATGAAGATTAAGA
genomic: TGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCGCTTCCTGgttagttcga ... tttgtaacagGGATGAAGATTAAGA