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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAAGCTTAACTTGCTTAATCTCGCCGTCCCTCCGGTCACCCACCGCTCTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGgtctctctctcgctccaagatctgactctcatcttcttcattatagtttctccttcgttttctactcttctgtgtcccaaattctctatttacttgtgtt...

Basic information

species Arabidopsis thaliana
transcript AT5G36890.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G36890.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os01g67220.3 (Oryza sativa), 5'ss of exon 1
ACAGAAGCTTAACTTGCTTAATCTCGCCGTCCCTCCGGTCACCCACCGCTCTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGgtctctctctcgctccaagatctgactctcatcttcttcattatagtttctccttcgttttctactcttctgtgtcccaaattctctatttacttgtgtt--
 | |  |       ||   |     |    |    |||       ||||    |||||||   |  ||||  ||||||||||||||| ||||||||||||||      | | | |   |    |  || ||||   |    |   | | | | |      | ||||   ||   | | |       || |    |||     
GCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACGCGGAGGTGACCCGCGGCGACTTCCCCGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGgtactcgccgcccgcgtcgcgtcgcatcgcatcgcatctgctt--gctgcccgtggtgactgtactagactagctactactagtagtagtgtactgtacccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058097|gb|DR353854.1|DR353854
EST:     CTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAG                         ATTGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAG
genomic: CTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGgtctctctct ... tgatttgtagATTGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAG
EST: gi|86058096|gb|DR353853.1|DR353853
EST:     CTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAG                         ATTGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAG
genomic: CTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGgtctctctct ... tgatttgtagATTGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAG
EST: gi|86058095|gb|DR353852.1|DR353852
EST:     CTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAG                         ATTGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAG
genomic: CTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGgtctctctct ... tgatttgtagATTGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAG