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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTTCATCGATGACAAGCTCCGTCCTGGTCTTAAGGCTCAGCCCGTTGCCGTTAAACTTCTTGATCTTGATGGTCTTCAAGGTCACCGTGAGTTTATGgttcgtacattcatttcattagtcctctgtttaagatacaaaaatattgagtctaaatgtctaactaatattatttttggggtgatttttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G35580.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35580.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 1
AGGGTTCATCGATGACAAGCTCCGTCCTGGTCTTAAGGCTCAGCCCGTTGCCGTTAAACTTCTTGATCTTGATGGTCTTCAAGGTCACCGTGAGTTTATGgttcgtaca--ttcatttcattagtcctctgtttaagatacaaaaatattgagtctaaatgtctaactaatattatttttggggtgatttttttcag
 || ||||| |||||||||||||| |||||| | |||||||||||||| || || || ||| | ||| | || ||  | || || || || || |   ||||  || ||  ||| ||   ||  |  ||   |   ||        || || ||     ||   || |  | || |||      |  ||  || |||
GGGCTTCATTGATGACAAGCTCCGCCCTGGTTTGAAGGCTCAGCCCGTGGCTGTCAAGCTTTTGGATTTGGAAGGCTTGCAGGGCCATCGAGAATGGCTGgtgagttcaagttcgttctttttattttccagtattgaattttccttaatgggtt--ggtgatgaaatggtgttttttccttcct--ttgattgcag