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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCCGAGAGCGAGATTCGTCAACTCTGCTTTAACGCTCGTCAAATCTTCCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCGgtaaattctcatgatcgaatcattaattagggtgaaatttgaaaaactagggtttcttatgaatttgagcattttgggggtgaaattgcaaagttagggttttttttatttatgaatttgagcatttgggtattgaaagttatgttgtggattctctcag

Basic information

species Arabidopsis thaliana
transcript AT5G27840.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27840.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA19G42050.1 (Glycine max), 5'ss of exon 1
CTTTCCGAGAGCGAGATTCGTCAACTCTGCTTTAACGCTCGTCAAATCTTCCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCGgtaaattctcatgatcgaatcattaattagggtgaaatttgaaaaactagggtttcttatgaatttgagcattttgggggtgaaattgcaaagttagggttttttttatttatgaatttgagcatttgggtattgaaagttatgttgtggattctctcag
|| || |||   ||||| |||||||||||| | |||||  | ||||||||||||||||| || | ||| || || |||| ||| || || |||||||||||| |     |    ||   |   |||| |   |   ||||   | |      | || | |    || | |   |      |    ||   |  ||   | || ||||                                                     
CTCTCTGAGTCGGAGATCCGTCAACTCTGCGTCAACGCCAGACAAATCTTCCTCTCTCAGCCAATTCTTCTCGACCTCCGTGCTCCCATCCGCATCTGCGgttagccacctctttcccctttataatcacact---attttccatatacatatctcatttaccctttatctcctctctctttt--ttattagctt---gcttcttttg----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124883068|gb|EH961970.1|EH961970
EST:     CCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCG                         GTGATATTCATGGTCAAATATCAAGATCTTTTGAGGTTGTTTGAATAC
genomic: CCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCGgtaaattctc ... attctctcagGTGATATTCATGGTCAA-TATCAAGATCTTTTGAGGTTGTTTGAATAC