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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAAAACAGATTTCGAAGTTTCGACGCCTCTCTATTCTTCGATCTCTTTCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctcccttttctctcagattttttttagtagctgaattagggtttttgttccgttttcgctattgcttcttccgcatcttataaagggtttaatgttatacttctctgatgtcatcag

Basic information

species Arabidopsis thaliana
transcript AT5G27720.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050911|gb|DR346666.1|DR346666
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|86050917|gb|DR346672.1|DR346672
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|164072209|gb|ES175279.1|ES175279
EST:     TTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|47831834|gb|CK121518.1|CK121518
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|164192751|gb|ES169742.1|ES169742
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATC
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATC
EST: gi|47832106|gb|CK121790.1|CK121790
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|116449433|gb|EG492025.1|EG492025
EST:     TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|86050907|gb|DR346662.1|DR346662
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|86050915|gb|DR346670.1|DR346670
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|86050918|gb|DR346673.1|DR346673
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|116480858|gb|EG523450.1|EG523450
EST:     GTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: GTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|86050914|gb|DR346669.1|DR346669
EST:     TCATATTTGAATCGTTCACCTTCTCGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|116480849|gb|EG523441.1|EG523441
EST:     TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: TCATATTTGAATCGTTCACCTTCTTGCCGATCTTCGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
EST: gi|86050916|gb|DR346671.1|DR346671
EST:     CATATTTGAATCGTTCACCTTCTCGCCGATCTTGCGGAGTATATTACAAG                         GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG
genomic: CATATTTGAATCGTTCACCTTCTTGCCGATCTT-CGGAGTATATTACAAGgtttctccct ... atgtcatcagGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG