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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCCGCTCTTTGAAAATCACTCGCCGTGTCTCTCTAAGCTTCTTCTTCACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatctccatcttcctccagatctcatttcctctaaatcgatattagttttttggtaacgagattaactccttttgtgaaaatggtttag

Basic information

species Arabidopsis thaliana
transcript AT5G26360.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829135|gb|CK118819.1|CK118819
EST:     CAAATATGCACGCACCGGTACTCGTTCTGA                         GCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
genomic: CAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
EST: gi|86074170|gb|DR369927.1|DR369927
EST:     ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGA                         GCGATTCGTTGAAGCGTGAATCTGGAAGCAAGGTTCATCATGGTAATATCC
genomic: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
EST: gi|47830309|gb|CK119993.1|CK119993
EST:     ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGA                         GCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
genomic: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCC
EST: gi|124954522|gb|EL029609.1|EL029609
EST:     ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGA                         GCGATTCGTTGAAG
genomic: ACTGTGAAAACCTCAGATCGCAAATATGCACGCACCGGTACTCGTTCTGAgtgagtatct ... aatggtttagGCGATTCGTTGAAG