Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGAGAACGTTCCATTCACATGTAGCCAAACAGATCGTTTCAACAAACAAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaacaaaagtacacattgtattgccagaccgaaatgatttaacgtcaaaactctaaaatccaacgttgcatggttgtttcttttcatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G25980.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831614|gb|CK121298.1|CK121298
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAC                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|47828775|gb|CK118459.1|CK118459
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116459414|gb|EG502006.1|EG502006
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116410417|gb|EG453009.1|EG453009
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116477703|gb|EG520295.1|EG520295
EST:     TGCATC-TCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: TGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116400371|gb|EG442963.1|EG442963
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116410415|gb|EG453007.1|EG453007
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116459408|gb|EG502000.1|EG502000
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|47829862|gb|CK119546.1|CK119546
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|47828808|gb|CK118492.1|CK118492
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|47828824|gb|CK118508.1|CK118508
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116477702|gb|EG520294.1|EG520294
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116444211|gb|EG486803.1|EG486803
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116410414|gb|EG453006.1|EG453006
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|124805269|gb|EH892726.1|EH892726
EST:     TCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: TCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|47829256|gb|CK118940.1|CK118940
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|116410418|gb|EG453010.1|EG453010
EST:     AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: AAGATTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
EST: gi|124922009|gb|EL000341.1|EL000341
EST:     TTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAG                         ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC
genomic: TTTCGAAAGCGACTTCATCTTCGGTGTTGCATCTTCTGCTTACCAGgcatgtaaca ... ttcatttcagATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCAC