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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCGTACCGCCGGATCTTCGCCACACCATTAATTTCTGCGTTCTCTCTTCTCAATTCGCCGCCGATCTCTCTGAGCGTAATTACCAAATCGTGCTTAGgtatgtcatcaaatcttgtctcacaccttccaattcatctccatgcactaattcattaagtaattagtcaagggtttaattcaaactttatggttaaatcgacgagagtgctgatgttttggggttagggtgtgaagaaaattatattgattctctctctctctctctcctgctaattagatctccttctcctag

Basic information

species Arabidopsis thaliana
transcript AT5G24350.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069290|gb|DR365047.1|DR365047
EST:     TCTCAATTCGCCGCCGATCTCTCTGAGCGTAATTACCAAATCGTGCTTAG                         AAACTGCTGTGAGGATCGATCTCGATTGATCATGGAAAGTCCTGGAAGAAA
genomic: TCTCAATTCGCCGCCGATCTCTCTGAGCGTAATTACCAAATCGTGCTTAGgtatgtcatc ... cttctcctagAAACTGCTGTGAGGATCGATCTCGATTGATCATGGAAAGTCCTGGAAGAAA
EST: gi|86069288|gb|DR365045.1|DR365045
EST:     TCTCAATTCGCCGCCGATCTCTCTGAGCGTAATTACCAAATCGTGCTTAG                         AAACTGCTGTGAGGATCGATCTCGATTGATCATGGAAAGTCCTGNAAGAAA
genomic: TCTCAATTCGCCGCCGATCTCTCTGAGCGTAATTACCAAATCGTGCTTAGgtatgtcatc ... cttctcctagAAACTGCTGTGAGGATCGATCTCGATTGATCATGGAAAGTCCTGGAAGAAA
EST: gi|86069287|gb|DR365044.1|DR365044
EST:     TCTCAATTCGCCGCCGATCTCTCTGAGCGTAATTACCAAATCGTGCTTAG                         AAACTGCTGTGAGGATCGATCTCGATTGATCATGGAAAGTCCTGGAAGAAA
genomic: TCTCAATTCGCCGCCGATCTCTCTGAGCGTAATTACCAAATCGTGCTTAGgtatgtcatc ... cttctcctagAAACTGCTGTGAGGATCGATCTCGATTGATCATGGAAAGTCCTGGAAGAAA