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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatccctcctttgcttctctcataatcatcctttgatgtcaatgtgatttctcattttcaattattgtatattcag

Basic information

species Arabidopsis thaliana
transcript AT5G24314.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86062440|gb|DR358197.1|DR358197
EST:     GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
genomic: GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|86087301|gb|DR383060.1|DR383060
EST:     TTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
genomic: TTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|86062439|gb|DR358196.1|DR358196
EST:     GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
genomic: GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|125298519|gb|EL312604.1|EL312604
EST:     GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATG
genomic: GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATG
EST: gi|86062438|gb|DR358195.1|DR358195
EST:     GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
genomic: GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|86062437|gb|DR358194.1|DR358194
EST:     GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
genomic: GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|86062441|gb|DR358198.1|DR358198
EST:     GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
genomic: GTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|86062443|gb|DR358200.1|DR358200
EST:     GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCCCAG
genomic: GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|86075735|gb|DR371492.1|DR371492
EST:     TCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAWGTGGGAATTTSCGATGCACATTTCAGTCTCAG
genomic: TCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG
EST: gi|124848083|gb|EH932520.1|EH932520
EST:     TGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCG
genomic: TGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCG
EST: gi|125314971|gb|EL329056.1|EL329056
EST:     GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTGCG
genomic: GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTGCG
EST: gi|125236021|gb|EL250106.1|EL250106
EST:     GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCT                         ATTATTGATACGAGAAGTGGGAATTTG
genomic: GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTgtaaaaatcc ... gtatattcagATTATTGATACGAGAAGTGGGAATTTG