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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGATGATGACGACGATCACGAATTCAAATTCGCACCTCCTTCTTCTGGACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttcgtaattgagatcttaagaaacagatttggctgctgtgatttttctcatttttgtgtttgtttttatgagttttattag

Basic information

species Arabidopsis thaliana
transcript AT5G23700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116454896|gb|EG497488.1|EG497488
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454918|gb|EG497510.1|EG497510
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454955|gb|EG497547.1|EG497547
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454856|gb|EG497448.1|EG497448
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116410234|gb|EG452826.1|EG452826
EST:     CGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: CGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454987|gb|EG497579.1|EG497579
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454956|gb|EG497548.1|EG497548
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454973|gb|EG497565.1|EG497565
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454917|gb|EG497509.1|EG497509
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454972|gb|EG497564.1|EG497564
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454897|gb|EG497489.1|EG497489
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
EST: gi|116454988|gb|EG497580.1|EG497580
EST:     GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCG                         ATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA
genomic: GACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCTGCGgtaaaatttc ... gttttattagATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACA