1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTGGACCAGTCGTCACTTTACCGGATTTTTGTTTTGGTGCTCGACGACTCTGATTCGAAATCTCTCTCTCTCGGAAAAGCTGAATCTGGATCATCAAAgtaagtctccatcgttacttttatctcttcgtgaagattctttaatcccatttatttgttcatatttgcaatcttcgaaaattcctgaagctaaacaaaa...
species | Arabidopsis thaliana |
transcript | AT5G22510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTGATTCGAAANNNNNNNNNNNNGGAAAAGCTGAATCTGGATCATCAAA GTATCATTTTAAAGTTTGATCATTTCTTCTTTGGGTATATAGGGTAGTATTEST: gi|116428370|gb|EG470962.1|EG470962
genomic: TCTGATTCGAAATCTCTCTCTCTCGGAAAAGCTGAATCTGGATCATCAAAgtaagtctcc ... atttttgcagGTATCATTTTAAAGTTTGATCATTTCTTCTTTGGGTATATAGGGTAGTATT
EST: GGAAAAGCTGAATCTGGATCATCAAA GTATCATTTTAAAGTTTGATCATTTCTTCTTTGGGTATATAGGGTAGTATT
genomic: GGAAAAGCTGAATCTGGATCATCAAAgtaagtctcc ... atttttgcagGTATCATTTTAAAGTTTGATCATTTCTTCTTTGGGTATATAGGGTAGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGGACCAGTCGTCACTTTACCGGATTTTTGTTTTGGTGCTCGACGACTCTGATTCGAAATCTCTCTCTCTCGGAAAAGCTGAATCTGGATCATCAAAgtaagtctccatcgttacttttatctcttcgtgaagattctttaatcccatttatttgttcatatttgcaatcttcgaaaattcctgaagctaaacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa