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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAACGCCGACTGCGATGAGGAATGCTTTCGGCAACGTTTTATCAGTCCTGATCCTCGTCCTCATTGGTGTCCTCGCTTTCTCGATCCGACTCTTCTCTgtgagttcactgatgtttctgcttggttgattcatttcagtgttcttcaatttgttaggctttagatccgatcggactagtttagatccgactaatctag...

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 1
-GGGAACGCCGACTGCGATGAGGAATGCTTTCGGCAACGTTTTATCAGTCCTGATCCTCGTCCTCATTGGTGTCCTCGCTTTCTCGATCCGACTCTTCTCTgtgagttcactgatgtttctgcttggttgattc-atttca-gtgttcttcaattt--gttaggctttagatccga---tcggactagtttagatccgactaatctag----------------------
 |    || |  | ||  |  | || || | |||   |||  | |  | | | | |||| ||||||| || |||||||| ||||||||||| |||||||| || || ||  ||||    |  ||      | || |  ||  | |     ||  |   | | | | || |   ||    ||||| | ||  |      |     |                         
GGCCGGCGGCAGCCGCC-TCCGCAACGCCTGCGGGGGCGTGCTGTGCGCCTTCACCCTCCTCCTCATCGGCGTCCTCGCGTTCTCGATCCGCCTCTTCTCCgtaagatc--tgatccgccccctccccccactccacctcgcgcggcggccagatccggctcgccgttcgtctcgcgtttcggaattgtgcattcttaatcggccccttcgttttttttttgtgcctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067003|gb|DR362760.1|DR362760
EST:     TGATCCTCGTCCTCATTGGTGTCCTCGCTTTCTCGATCCGACTCTTCTCT                         GTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTAT
genomic: TGATCCTCGTCCTCATTGGTGTCCTCGCTTTCTCGATCCGACTCTTCTCTgtgagttcac ... tatttttcagGTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTAT
EST: gi|86067002|gb|DR362759.1|DR362759
EST:     GATCCTCAGTCCTCATTGGTGTCCTCGCTTTCTCGATCCGACTCTTNTCT                         GTTATAAAGTATGAAAGTGTGATTCATGATTTTGATCCTTACTT
genomic: GATCCTC-GTCCTCATTGGTGTCCTCGCTTTCTCGATCCGACTCTTCTCTgtgagttcac ... tatttttcagGTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTT