1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAACTCAGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttctcacttttcctattgtttttgcgacacgattcgattgtttctattcccgttttgacgtataagagagtttgaatttgcag
species | Arabidopsis thaliana |
transcript | AT5G19510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAEST: gi|125193499|gb|EL208453.1|EL208453
genomic: CCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACEST: gi|164201137|gb|ES031786.1|ES031786
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTAC
EST: GGTGTCAAATCCGTGGAGGAGTACCTCGCCGGAAAAACCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAEST: gi|125074595|gb|EL138477.1|EL138477
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCA
EST: CCGGAAAAACCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAEST: gi|124938342|gb|EL014981.1|EL014981
genomic: CCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: CTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAEST: gi|124924211|gb|EL002329.1|EL002329
genomic: CTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: CACCTCGCCGGAAAAACCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAEST: gi|152034690|gb|BP834827.2|BP834827
genomic: CACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAEST: gi|125298263|gb|EL312348.1|EL312348
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: TCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAEST: gi|116450797|gb|EG493389.1|EG493389
genomic: TCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAEST: gi|124824288|gb|EH909154.1|EH909154
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG AGATCAATTGTCCTGTGGATGATGTCAAGGTTTACGCTG
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTC-TGTGGATGATGTCAAGGTTTACGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACTCAGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttctcacttttcctattgtttttgcgacacgattcgattgtttctattcccgttttgacgtataagagagtttgaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA