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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTCAGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttctcacttttcctattgtttttgcgacacgattcgattgtttctattcccgttttgacgtataagagagtttgaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G19510.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124747387|gb|EH837521.1|EH837521
EST:     CCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
genomic: CCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: gi|125193499|gb|EL208453.1|EL208453
EST:     GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTAC
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTAC
EST: gi|164201137|gb|ES031786.1|ES031786
EST:     GGTGTCAAATCCGTGGAGGAGTACCTCGCCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCA
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCA
EST: gi|125074595|gb|EL138477.1|EL138477
EST:     CCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
genomic: CCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: gi|124938342|gb|EL014981.1|EL014981
EST:     CTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
genomic: CTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: gi|124924211|gb|EL002329.1|EL002329
EST:     CACCTCGCCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
genomic: CACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: gi|152034690|gb|BP834827.2|BP834827
EST:     GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: gi|125298263|gb|EL312348.1|EL312348
EST:     TCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
genomic: TCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: gi|116450797|gb|EG493389.1|EG493389
EST:     GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAA
EST: gi|124824288|gb|EH909154.1|EH909154
EST:     GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGG                         AGATCAATTGTCCTGTGGATGATGTCAAGGTTTACGCTG
genomic: GGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttc ... gaatttgcagAGATCAATTGTC-TGTGGATGATGTCAAGGTTTACGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACTCAGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGgtaaagtttctcacttttcctattgtttttgcgacacgattcgattgtttctattcccgttttgacgtataagagagtttgaatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA