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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGGTGTTGAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATTGGTGTCATGTTGTATATCCTCCTGTGTGGTGTTCCACCTTTTTGGGCTGgtaatgatatctgactccctccctatcttgtcaaaacaaaagacagggatcttctgattcattcatgtttgttttttcgattacag

Basic information

species Arabidopsis thaliana
transcript AT5G19360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19360.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 2
CCAGAGGTGTTGAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATTGGTGTCATGTTGTATATCCTCCTGTGTGGTGTTCCACCTTTTTGGGCTGgtaatgatatctgactccctccctatcttgtcaaaacaaaagacagggatcttctgattcattcatgtttgttttttcgattacag--------------------------------------------------
|| || || |||| ||| |  |||||||||||||  ||||| |||||  |||| || |||||||||||||| || ||||| ||||| || || ||||| ||| || ||    | || | |   |||  | |  ||     |  ||       ||  |||  | ||      | | | |   || ||                                                  
CCTGAAGTATTGAAGAGAAGATATGGACCAGAGGTCGATATATGGAGTGTTGGGGTTATGTTGTATATCCTTCTATGTGGAGTTCCTCCCTTCTGGGCAGgtgattat-caagtcttctttgttatgctctttaattttcaacca------ctccaattactccacacacatgtatgcagatagagaagaaatatttaaaatgatttaaactcacaaagagaaattggattaacag