1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGCGGCGGTTGTTTAATACTTGCAAGGAAGTGTTCTCTAATGGTGGTCCTGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGgtatacaatttttatcagttttctgaattccttgttctgggtttccataaagttttgatttttgattggattttggtttatag
species | Arabidopsis thaliana |
transcript | AT5G15120.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTG ACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCCEST: gi|164065851|gb|ES011557.1|ES011557
genomic: TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGgtatacaatt ... tggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
EST: CCAACAGCTACGAGAGATTCTTG ACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCCEST: gi|116471642|gb|EG514234.1|EG514234
genomic: CCAACAGCTACGAGAGATTCTTGgtatacaatt ... tggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
EST: TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTG ATGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
genomic: TGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGgtatacaatt ... tggtttatagACGATATGAAACCAGAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCGGCGGTTGTTTAATACTTGCAAGGAAGTGTTCTCTAATGGTGGTCCTGGTGTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGgtatacaatttttatcagttttctgaattccttgttctgggtttccataaagttttgatttttgattggattttggtttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA