1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAAAACCCTAAAAGCTGAGCCGCGTCGAGAGCATTTTATATCTTCAATCATCTTACGCAGGCTGTTGTAGCAGCAGTGTCTATCGGAGACGATGAAGgtggctccatctttttcttctcatcaattctgttctcgtttatctctttgttatttcgtttgattcaatcgattttggtttgtgtcgcag
species | Arabidopsis thaliana |
transcript | AT5G10360.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTGTAGCAGCAGTGTCTATCGGAGACGATGAAG TTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAAEST: gi|116420455|gb|EG463047.1|EG463047
genomic: GTTGTAGCAGCAGTGTCTATCGGAGACGATGAAGgtggctccat ... tgtgtcgcagTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAA
EST: TCATCTTACGCAGGCTGTTGTAGCAGCAGTGTCTATCGGAGACGATGAAG TTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATEST: gi|125129643|gb|EL173301.1|EL173301
genomic: TCATCTTACGCAGGCTGTTGTAGCAGCAGTGTCTATCGGAGACGATGAAGgtggctccat ... tgtgtcgcagTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGAT
EST: CAGCAGTGTCTATCGGAGACGATGAAG TTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAEST: gi|116469839|gb|EG512431.1|EG512431
genomic: CAGCAGTGTCTATCGGAGACGATGAAGgtggctccat ... tgtgtcgcagTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAA
EST: GTAGCAGTAGTGTCTATCGGAGACGATGAAG TTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATEST: gi|125280247|gb|EL294332.1|EL294332
genomic: GTAGCAGCAGTGTCTATCGGAGACGATGAAGgtggctccat ... tgtgtcgcagTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGAT
EST: GTAGCAGCAGTGTCTATCGGAGACGATGAAG TTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGA
genomic: GTAGCAGCAGTGTCTATCGGAGACGATGAAGgtggctccat ... tgtgtcgcagTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAACCCTAAAAGCTGAGCCGCGTCGAGAGCATTTTATATCTTCAATCATCTTACGCAGGCTGTTGTAGCAGCAGTGTCTATCGGAGACGATGAAGgtggctccatctttttcttctcatcaattctgttctcgtttatctctttgttatttcgtttgattcaatcgattttggtttgtgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT