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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G10260.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G128771_T01 (Zea mays), 5'ss of exon 1
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatcccatctcgatcaaaattaattttgatccat-tgtctgtgagatccacgatc-ctgttgctgtaat-gaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag
  | || |||||||| || |||||||| || || || ||||| ||||||||||||||||||||  | |||||||||||||| ||||| ||||| || |||||   | |     |    |||  |||   ||| |   |    |   | |    | |  |    |   |||||  |||  ||  ||| | || |||    | |                                                                          
GCTGGCCAAGTACAAACTGGTGTTCCTCGGCGACCAGTCCGTGGGCAAGACCAGCATCATCACCAGATTCATGTACGACAAGTTCGACACCACCTACCAGgt--aaccgagaccgcgaatcgtatccatatccaccgtctcgtccgtgcgcgcggcgatcgatttaccgatcgttgtgtctacaattgcatcgattgtgtcc--------------------------------------------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 1
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatccca-tctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgc---tgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag
  | || || ||||||||||| ||| | || ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| || |||||   ||  |  |  || ||| || ||||  |   ||||  ||||  ||  ||| |  |||  ||     |   |       | | ||  ||| ||  | ||                                                                           
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgtcacat--tcattctcaatctcaatctcattttcaatttctttt--tcatttgccgttgatctctctatttacgacatgcattttatttatgcatgtgctttc-------------------------------------------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G14390.1 (Glycine max), 5'ss of exon 1
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgt-tggatcattttc--ttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag
  | || || ||||||||||| ||| | || ||||||||||||||||| |||||||||||||| || ||||||||||||||||| || || || || ||||| |   ||||||||  ||  ||      | ||||    | | ||  ||       | | |  |  |    ||    || |  | | |  || ||||   |  |||                                                                      
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTTGACACAACCTACCAGgtctatctcattttcattttcatttgccgttgatctctgtcatttacgacatgcgttttatatgtgc----atgtgatttccctcacg--tgaatcaatctgtgaa----------------------------------------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 1
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag
  | || || ||||||||||| ||| | || |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| || |  ||||||||        ||| || || || |||||  |     ||   |||  |  ||| |   | |  || | |||   ||||    || || |  ||||  ||||   |  |||  |   |||                                                       
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACACTAACTATCAGgtc-------tttatttta-ccgatctcctttttctttttcttt--tttatttttaatcat-tcgaagatttcgttg----aacgatt--atcaatttcaatttgacta--actccatt------------------------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 1
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag
  | || || ||||||||||| ||| | || |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| |  | |||||||||    | ||||| ||||  || |||||  |     ||  |  | ||   ||||   |   ||||         || || | ||  ||  ||||  || |  | | | |                                                                
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACATTAATTATCAGgtct--ttattttattcttaccgatctctctttttttttctcgtaattttttgt---tatcatccgaagat---ttcctttgatcgatt-atcaatttgactaattcca----------------------------------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ30542 (Selaginella moellendorffii), 5'ss of exon 1
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgtt--ggatcat---tttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag
  | ||||||||||||||||| || || || ||||| || || || ||||| ||||||||||| || |||||||| || || || || | ||| || |||||    ||| |    |||||||| || ||  | |    |||||     |  || |                                                                                                                           
GCTTGCAAAGTACAAGCTCGTCTTTCTCGGCGATCAGTCTGTGGGGAAGACGAGCATCATCACGCGATTCATGTATGATAAGTTTGACAACACATACCAGgtatgagattacgagtttcttctctctcactttggc--aaattggaaattttcaag--------------------------------------------------------------------------------------------------------------------------