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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTTCTTCTCTCTGTTCAGAGATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAGgtttagtctccagcttttctttttgctacgtctcactttctttttagatagaaatcgtttgatttttgaagtgttggtatcactcag

Basic information

species Arabidopsis thaliana
transcript AT5G09770.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G09770.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv04s0044g00980.t01 (Vitis vinifera), 5'ss of exon 1
----------AGGGTTCTTCTCTCTGTTCAGAGATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAGgtttagtctc-----cagcttttctttttgctacgtctcactttctttttagatagaaatcgtttgatttttgaagtgttggta-tcactcag---------
            ||   |||||||| | || |  || | || ||         |||||||||||||| ||||||||||||||  | || ||  | ||||||||||| ||||||    ||      |  |||||    |  |  |||| ||   |  |   ||  |||   ||    ||||| || | ||  |  | | |            
CACATCAGACCAGGGGATTCTCTCTTTCCAAATCTCTCATCGCC---------ATGACGAAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAGgtttcaattcaattataagttttccaaatcttgggtcttaccagccgtacggactgaa--tgtagtgtttttaaaattttcttccttattttatgccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124910430|gb|EH984510.1|EH984510
EST:     AGTTCAGGAAGACTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAG                         GACTATGGTTTCTCAGTTGG
genomic: AGTTCAGGAAG-CTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAGgtttagtctc ... tatcactcagGACTATGGTTTCTCAGTTGG
EST: gi|19875182|gb|AU236013.1|AU236013
EST:     AGTTCAGGAAGCCTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAG                         GACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACCACTGTCAC
genomic: AGTTCAGGAAG-CTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAGgtttagtctc ... tatcactcagGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACCACTGTCAC