1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAAATCACAATGGGAGAAGCGCCTGCCCAGATTCCGACGAGTTTCGGCCACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGgtctggattctcttgtcacttgtgatttgcgtgtttcttctcttgcgaatattttttgcctaatctggtttctccaacag
species | Arabidopsis thaliana |
transcript | AT5G08565.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAG TTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGATEST: gi|86085973|gb|DR381732.1|DR381732
genomic: ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGgtctggattc ... tctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
EST: ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAG TTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATWGAAGACGATEST: gi|164160751|gb|ES029470.1|ES029470
genomic: ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGgtctggattc ... tctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
EST: GCCGCCTCGTCAAGACCTACGATCAG TTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
genomic: GCCGCCTCGTCAAGACCTACGATCAGgtctggattc ... tctccaacagTTTAGGGATTCTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAATCACAATGGGAGAAGCGCCTGCCCAGATTCCGACGAGTTTCGGCCACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGgtctggattctcttgtcacttgtgatttgcgtgtttcttctcttgcgaatattttttgcctaatctggtttctccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT