1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTCGCCGTTCCGTTAGCTTACGCCGGCGTCACTTTCGTCACTGCTTTCGTCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGgtctctgattccactctctcttttgtgatccttacttaaaaaaaaaaaaactaattcaattttggttttttgaatctcttcag
species | Arabidopsis thaliana |
transcript | AT5G08540.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAAAACCGTTCAGAAGTTCTCTTCCCCTAAAGCTCAACGCAAGAAACTG GTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTGTTACGAAAAEST: gi|86052732|gb|DR348489.1|DR348489
genomic: TCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGgtctctgatt ... atctcttcagGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAA
EST: TCAAAACCGTTCAGAAGTTCTCTTCCCCTAAAGCTCAACGCAAGAAACTG GTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTGTTACGAAAAEST: gi|124841432|gb|EH925869.1|EH925869
genomic: TCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGgtctctgatt ... atctcttcagGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAA
EST: TCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTG GTGAATCAGAAATGCTATGCTTTGCAGATCTEST: gi|86052733|gb|DR348490.1|DR348490
genomic: TCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGgtctctgatt ... atctcttcagGTGAATCAGAA-TGCTATGCTTTGCAGATCT
EST: TCAAAACCGTTCAGAAGTTCTCTTCCCCTAAAGCTCAACGCAAGAAACTG GTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTGTTACGAAAAEST: gi|86052744|gb|DR348501.1|DR348501
genomic: TCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGgtctctgatt ... atctcttcagGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAA
EST: TCAAAACCGTTCAGAAGTTCTCTTCCCCTAAAGCTCAACGCAAGAAACTG GTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTGTTACGAAAA
genomic: TCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGgtctctgatt ... atctcttcagGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGCCGTTCCGTTAGCTTACGCCGGCGTCACTTTCGTCACTGCTTTCGTCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGgtctctgattccactctctcttttgtgatccttacttaaaaaaaaaaaaactaattcaattttggttttttgaatctcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA