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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACCCACTATCTCCACAAGAAGGTTCTTGACCTTGGTTTCTCGGCTAAAGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggttttaaaaaaaaacataatttagcaacacacatccccccatgtctaaattcaaacaaggttttgaagtctaatgagttctgttttttggtgttttttgttttttgttaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G07680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164000408|gb|ES134117.1|ES134117
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGACAAAA-TTGGTGAGAAAGAATGGTACTTTTTCTGTG
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAG-CAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTG
EST: gi|86042217|gb|DR337972.1|DR337972
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
EST: gi|164148665|gb|ES196529.1|ES196529
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTG
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTG
EST: gi|164011069|gb|ES196348.1|ES196348
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGCAAAA-TTGGTGAGAAAGAATGGTACTTTTTCTGTG
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTG
EST: gi|86042218|gb|DR337973.1|DR337973
EST:     GCTATTGGTGAGGTTKATTTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAWAGCAAAA-TTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
genomic: GCTATTGGTGAGGTTGATTT-GAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
EST: gi|19875102|gb|AU235933.1|AU235933
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
EST: gi|164133766|gb|ES198112.1|ES198112
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGACAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTG
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAG-CAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTG
EST: gi|86042223|gb|DR337978.1|DR337978
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
EST: gi|86042222|gb|DR337977.1|DR337977
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
EST: gi|164055788|gb|ES200573.1|ES200573
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGACAAAAATTGGTGAGAAAGAATGGTACTTTT-CTGTG
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAG-CAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTG
EST: gi|86042224|gb|DR337979.1|DR337979
EST:     AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCAT                         ATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA
genomic: AGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggtttta ... tgttaaacagATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAACCCACTATCTCCACAAGAAGGTTCTTGACCTTGGTTTCTCGGCTAAAGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATgtaggttttaaaaaaaaacataatttagcaacacacatccccccatgtctaaattcaaacaaggttttgaagtctaatgagttctgttttttggtgttttttgttttttgttaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA