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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTCACCGTCTCAGAGGTCACTGTGTCGCCAAGTTTCTCGGTAGACTCTCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACACgtacgttttctaaattttgtatcgatgttgatttagggttctaaatactagagaatcacgttttggttctgtttctcaagtttgtcggttactaaatcga...

Basic information

species Arabidopsis thaliana
transcript AT5G07250.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831274|gb|CK120958.1|CK120958
EST:     TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACAC                         ATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGA
genomic: TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACACgtacgttttc ... atacttgaagATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGA
EST: gi|124912294|gb|EH986374.1|EH986374
EST:     TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACAC                         ATTGGAGAAGTTAGGAG
genomic: TCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCTTCTCACACgtacgttttc ... atacttgaagATTGGAGAAGTTAGGAG