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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTGTGACCGTTACTGGATACTCCGGTAGAAGCTCGGCTTACGCGCCTTCTTTCCGTTCGATTAAATGCGTCTCTGTTTCTCCGGAAGCTTCAATAGgtgaagcaatgctcttcgttttttcttttaatttgggtttttgattgtttgattttttaccgataaaatgcgggaaaatggttgaacgacatttatgtca...

Basic information

species Arabidopsis thaliana
transcript AT5G05730.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124744118|gb|EH835280.1|EH835280
EST:     TTCTTTCCGTTCGATTAAATGCGTCTCTGTTTCTCCGGAAGCTTCAATAG                         TAAGTGATACAAAGAAGTTGGCAGATGCTT
genomic: TTCTTTCCGTTCGATTAAATGCGTCTCTGTTTCTCCGGAAGCTTCAATAGgtgaagcaat ... ttctctgcagTAAGTGATACAAAGAAGTTGGCAGATGCTT
EST: gi|116443895|gb|EG486487.1|EG486487
EST:     TTCTTTCCGTTCGATTAAATGCGTCTCTGTTTCTCCGGAAGCTTCAATAG                         TAAGTGATACAAAGAAGTTGGCAGATGCTTCTAAGAGTACAAACCTTATAC
genomic: TTCTTTCCGTTCGATTAAATGCGTCTCTGTTTCTCCGGAAGCTTCAATAGgtgaagcaat ... ttctctgcagTAAGTGATACAAAGAAGTTGGCAGATGCTTCTAAGAGTACAAACCTTATAC