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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGACGCTGCCACTGGTTCTGGAAAAACCCTAGCTTTCGTCGTTCCCCTCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGgtaagataattgccaactaatctggaaattaggatttttgtttcgattgtgagcttatctttgaaattaaattacag

Basic information

species Arabidopsis thaliana
transcript AT5G05450.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G05450.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G35640.1 (Glycine max), 5'ss of exon 1
---CGTCGACGCTGCCACTGGTTCTGGAAAAACCCTAGCTTTCGTCGTTCCCCTCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGgtaagataattgccaact-----aatctggaaattagg----atttttgtttcgattg---tgagcttatctt-tgaaattaaattacag----------------------------------------------------------------------
   ||||||||| ||||| ||||| || |||||||||||||| ||| |||| ||||| || || || ||||| ||| | ||    | ||| ||||||||| |||||   | ||     | |     |||  |   ||   |    | || |||||   ||      || |||| || |  |  |    || |                                                                       
CGCCGTCGACGCCGCCACCGGTTCCGGCAAAACCCTAGCTTTTGTCATTCCTCTCGTCGAGATTCTACGTCGCTCCTCTTC---TCATCCCAAGCCTCACAAGgtagcgtgatattggaatttaagaatacgtgcatcgcggaatacttgtgttttagttagttccagtttattttgttgagcttggatataattaggttaatagcaataaataatctaataagcaattaggataatcattattatgtgtacacttgttgtag

upper sequence: AT5G05450.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv13s0067g01900.t01 (Vitis vinifera), 5'ss of exon 1
---CGTCGACGCTGCCACTGGTTCTGGAAAAACCCTAGCTTTCGTCGTTCCCCTCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGgtaagataattgccaactaatctggaaa-----ttaggatttttgtttcgattgtgagcttatctttgaaattaaattacag------------------
   ||||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||| || || ||||| ||   | | || |   | || ||||||||||||||    |  ||  |    |||     ||     ||  |  |   |     | ||||   | |    | |  ||   || | |                  
CGCCGTCGACGCCGCCACCGGTTCGGGAAAAACCCTAGCCTTCGTTGTTCCTCTCGTCGAGATTCTCCGCCG---CGCTTCTTCTGCCCCCAAGCCTCACCAGgttgattccttttctttgaattccctaagctccttttggctgccgagaaaactgtggaataaaaggttatgtttggttcccggaaaatttgagggtaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875299|gb|AU236130.1|AU236130
EST:     TCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAG                         GTCATGGGGGTGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATAT
genomic: TCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGgtaagataat ... taaattacagGTCATGGGGGTGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATAT
EST: gi|116468374|gb|EG510966.1|EG510966
EST:     TCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAG                         GTCATGGGGGTGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATAT
genomic: TCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGgtaagataat ... taaattacagGTCATGGGGGTGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATAT