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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTCACCTATACGCGTCTCCTCTAGTTCTACCCCCAAAGCTCGATTCATCGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcagcgcgattctctctgatctaaatttctgtttcctgtggatgattaaatctggatcggattgtttgattttgaatttgctttttgtttatggtttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G04440.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428965|gb|EG471557.1|EG471557
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         TTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045783|gb|DR341538.1|DR341538
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         T--AGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045777|gb|DR341532.1|DR341532
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         TTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045781|gb|DR341536.1|DR341536
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         T--AGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045778|gb|DR341533.1|DR341533
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         T--AGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045775|gb|DR341530.1|DR341530
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         TTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045782|gb|DR341537.1|DR341537
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         TTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045780|gb|DR341535.1|DR341535
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         TTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
EST: gi|86045776|gb|DR341531.1|DR341531
EST:     CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAA                         TTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA
genomic: CGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcag ... tggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGTCACCTATACGCGTCTCCTCTAGTTCTACCCCCAAAGCTCGATTCATCGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCTCTAAgtaacttcagcgcgattctctctgatctaaatttctgtttcctgtggatgattaaatctggatcggattgtttgattttgaatttgctttttgtttatggtttgcag

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